DnaSP, also known as DNA Sequence Polymorphism, is a software package for Windows platform that is broadly used in the analysis of nucleotide polymorphism from aligned DNA sequence data. The program can also run on Apple Macintosh platforms (using VirtualBox, VMWare Fussion, Parallels Desktop or Virtual PC), and on Linux and Unix-based operating systems (using VirtualBox, VMWare or Wine.
DnaSP has the ability to estimate several measures of DNA sequence variation within and between populations (in noncoding, synonymous or nonsynonymous sites, or in various sorts of codon positions), as well as linkage disequilibrium, recombination, gene flow and gene conversion parameters. It is also widely used to carry out several tests of neutrality such as the Hudson, Kreitman and Aguadé's Test, Fu and Li's Tests and the Tajima’s Test as well as to estimate the confidence intervals of some test-statistics by the coalescent.
DnaSP offers an interface that provides several commands to import, export, view, print and save data files, results or graphs. It can present outputs in rows and columns as on a spreadsheet) and graphs and print them in any printer or save as a file.
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If you have additional information about which types of files DnaSP can process, please do get in touch - we would love hearing from you.
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